{ "_id": "6a153ce7acfb0bcc41d5407f", "Package": "JSDNE", "Title": "Estimating the Age using Auricular Surface by DNE", "Version": "4.6", "Authors@R": "person(\"Jisun\", \"Jang\", email=\"jisun.jang.19@ucl.ac.uk\", role = c(\"aut\", \"cre\"))", "Maintainer": "Jisun Jang ", "Description": "The age is estimated by calculating the Dirichlet Normal\nEnergy (DNE) on the whole auricular surface and the apex of the\nauricular surface. It involves three estimation methods:\nprincipal component discriminant analysis (PCQDA), and\nprincipal component logistic regression analysis (PCLR)\nmethods, principal component regression analysis with Southeast\nAsian (A_PCR), and principal component regression analysis with\nmultipopulation (M_PCR). The package is created with the data\nfrom the Louis Lopes Collection in Lisbon, the 21st Century\nIdentified Human Remains Collection in Coimbra, and the CAL\nMilano Cemetery Skeletal Collection in Milan, and the skeletal\ncollection at Khon Kaen University (KKU) Human Skeletal\nResearch Centre (HSRC), housed in the Department of Anatomy in\nthe Faculty of Medicine at KKU in Khon Kaen.", "License": "GPL-3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.1", "LazyData": "true", "VignetteBuilder": "knitr", "Repository": "https://jisunjang19.r-universe.dev", "Date/Publication": "2025-11-27 06:44:01 UTC", "RemoteUrl": "https://github.com/jisunjang19/cran-jsdne", "RemoteRef": "HEAD", "RemoteSha": "a02022075739f9b96ad81216096e952c9e5d4029", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-26 06:19:24 UTC", "User": "root" }, "Author": "Jisun Jang [aut, cre]", "MD5sum": "c522ad9b697b61c1ab2d8d8d76dfb091", "_user": "jisunjang19", "_type": "src", "_file": "JSDNE_4.6.tar.gz", "_fileid": "76dcb0843faca074628465ff923091a1419d3d175f3e5e71d90da6007169f8cd", "_filesize": 1106188, "_sha256": "76dcb0843faca074628465ff923091a1419d3d175f3e5e71d90da6007169f8cd", "_created": "2026-05-26T06:19:24.000Z", "_published": "2026-05-26T06:25:43.745Z", "_distro": "noble", "_jobs": [ { "job": 77818485090, "time": 172, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7210211240" }, { "job": 77818485093, "time": 180, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7210213033" }, { "job": 77818485144, "time": 153, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7210245415" }, { "job": 77818485111, "time": 184, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7210241988" }, { "job": 77818093797, "time": 205, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7210172125" }, { "job": 77818485083, "time": 114, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7210198178" }, { "job": 77818485102, "time": 151, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7210206500" }, { "job": 77818485118, "time": 148, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7210206255" }, { "job": 77818485116, "time": 130, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7210201735" } ], "_buildurl": "https://github.com/r-universe/jisunjang19/actions/runs/26435736767", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/jisunjang19/cran-jsdne", "_commit": { "id": "a02022075739f9b96ad81216096e952c9e5d4029", "author": "Jisun Jang <146486396+jisunjang19@users.noreply.github.com>", "committer": "GitHub ", "message": "Add files via upload", "time": 1764225841 }, "_maintainer": { "name": "Jisun Jang", "email": "jisun.jang.19@ucl.ac.uk", "login": "jisunjang19", "description": "PhD student at University College London (UCL)", "uuid": 146486396 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "dplyr", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "molaR", "role": "Imports" }, { "package": "nnet", "role": "Imports" }, { "package": "Rvcg", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "jisunjang19", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-28", "n": 1 }, { "week": "2025-48", "n": 11 } ], "_tags": [], "_stars": 0, "_contributors": [ { "user": "jisunjang19", "count": 93, "uuid": 146486396 } ], "_userbio": { "uuid": 146486396, "type": "user", "name": "Jisun Jang", "description": "PhD student at University College London (UCL)" }, "_downloads": { "count": 170, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/JSDNE" }, "_devurl": "https://github.com/jisunjang19/cran-jsdne", "_searchresults": 6, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/JSDNE.html", "manual.pdf" ], "_homeurl": "https://github.com/jisunjang19/cran-jsdne", "_realowner": "jisunjang19", "_cranurl": true, "_releases": [ { "version": "4.2.2", "date": "2024-02-29" }, { "version": "4.3.2", "date": "2024-04-16" }, { "version": "4.3.4", "date": "2024-07-10" }, { "version": "4.4.4", "date": "2024-09-05" }, { "version": "4.5", "date": "2025-05-03" }, { "version": "4.6", "date": "2025-11-27" } ], "_exports": [ "A_PCR_result", "A_PCR_Test", "A_PCR_Train", "Distribution", "FirstObservation", "M_PCR_result", "M_PCR_Test", "M_PCR_Train", "MultiData", "PCLR_result", "PCLR_Test", "PCLR_Train", "PCQDA_result", "PCQDA_Test", "PCQDA_Train", "PCR_result", "PCR_Test", "PCR_Train", "RawData", "SecondObservation", "ThaiData", "TrendLine" ], "_datasets": [ { "name": "A_PCR_Test", "title": "A_PCR_Test", "object": "A_PCR_Test", "class": [ "data.frame" ], "fields": [ "Age", "MeanDNE.Apex", "Proportion.DNEunder0.0001", "Proportion.DNEover0.6", "IQRDNE.Whole" ], "rows": 66, "table": true, "tojson": true }, { "name": "A_PCR_Train", "title": "A_PCR_Train", "object": "A_PCR_Train", "class": [ "data.frame" ], "fields": [ "Age", "MeanDNE.Apex", "Proportion.DNEunder0.0001", "Proportion.DNEover0.6", "IQRDNE.Whole" ], "rows": 269, "table": true, "tojson": true }, { "name": "Apex", "title": "Surface mesh of apex of auricular surface.", "object": "Apex", "class": [ "mesh3d" ], "fields": [], "table": false, "tojson": false }, { "name": "Distribution", "title": "Distribution", "object": "Distribution", "class": [ "data.frame" ], "fields": [ "Age", "Sex", "Population" ], "rows": 1225, "table": true, "tojson": true }, { "name": "FirstObservation", "title": "FirstObservation", "object": "FirstObservation", "class": [ "data.frame" ], "fields": [ "MeanDNE.Apex", "MedianDNE.Apex", "IQRDNE.Apex", "TotalDNE.TotalPolygonFaces", "MedianDNE.Whole", "IQRDNE.Whole", "MeanDNE.Convex", "MeanDNE.Concave", "Proportion.DNEunder0.0001", "Proportion.DNEover0.6" ], "rows": 140, "table": true, "tojson": true }, { "name": "M_PCR_Test", "title": "M_PCR_Train", "object": "M_PCR_Test", "class": [ "data.frame" ], "fields": [ "Age", "MeanDNE.Apex", "MedianDNE.Apex", "MeanDNE.Convex", "MeanDNE.Concave", "Proportion.DNEunder0.0001", "Population" ], "rows": 272, "table": true, "tojson": true }, { "name": "M_PCR_Train", "title": "M_PCR_Train", "object": "M_PCR_Train", "class": [ "data.frame" ], "fields": [ "Age", "MeanDNE.Apex", "MedianDNE.Apex", "MeanDNE.Convex", "MeanDNE.Concave", "Proportion.DNEunder0.0001", "Population" ], "rows": 953, "table": true, "tojson": true }, { "name": "PCLR_Test", "title": "PCLR_Test", "object": "PCLR_Test", "class": [ "data.frame" ], "fields": [ "Age", "Cluster1", "MeanDNE.Apex", "TotalDNE.TotalPolygonFaces", "MedianDNE.Whole", "IQRDNE.Whole", "MeanDNE.Convex" ], "rows": 191, "table": true, "tojson": true }, { "name": "PCLR_Train", "title": "PCLR_Train", "object": "PCLR_Train", "class": [ "data.frame" ], "fields": [ "Age", "Cluster1", "MeanDNE.Apex", "TotalDNE.TotalPolygonFaces", "MedianDNE.Whole", "IQRDNE.Whole", "MeanDNE.Convex" ], "rows": 699, "table": true, "tojson": true }, { "name": "PCQDA_Test", "title": "PCQDA_Test", "object": "PCQDA_Test", "class": [ "data.frame" ], "fields": [ "Cluster2", "Age", "MeanDNE.Apex", "TotalDNE.TotalPolygonFaces", "Proportion.DNEunder0.0001", "Proportion.DNEover0.6" ], "rows": 186, "table": true, "tojson": true }, { "name": "PCQDA_Train", "title": "PCQDA_Train", "object": "PCQDA_Train", "class": [ "data.frame" ], "fields": [ "Cluster2", "Age", "MeanDNE.Apex", "TotalDNE.TotalPolygonFaces", "Proportion.DNEunder0.0001", "Proportion.DNEover0.6" ], "rows": 704, "table": true, "tojson": true }, { "name": "PCR_Test", "title": "PCR_Test", "object": "PCR_Test", "class": [ "data.frame" ], "fields": [ "Age", "MeanDNE.Apex", "IQRDNE.Apex", "TotalDNE.TotalPolygonFaces", "MeanDNE.Convex", "Proportion.DNEunder0.0001" ], "rows": 188, "table": true, "tojson": true }, { "name": "PCR_Train", "title": "PCR_Train", "object": "PCR_Train", "class": [ "data.frame" ], "fields": [ "Age", "MeanDNE.Apex", "IQRDNE.Apex", "TotalDNE.TotalPolygonFaces", "MeanDNE.Convex", "Proportion.DNEunder0.0001" ], "rows": 702, "table": true, "tojson": true }, { "name": "RawData", "title": "RawData", "object": "RawData", "class": [ "data.frame" ], "fields": [ "Age", "Cluster1", "Cluster2", "Collection", "Sex", "MeanDNE.Apex", "MedianDNE.Apex", "IQRDNE.Apex", "TotalDNE.TotalPolygonFaces", "MedianDNE.Whole", "IQRDNE.Whole", "MeanDNE.Convex", "MeanDNE.Concave", "Proportion.DNEunder0.0001", "Proportion.DNEover0.6" ], "rows": 890, "table": true, "tojson": true }, { "name": "SecondObservation", "title": "SecondObservation", "object": "SecondObservation", "class": [ "data.frame" ], "fields": [ "MeanDNE.Apex", "MedianDNE.Apex", "IQRDNE.Apex", "TotalDNE.TotalPolygonFaces", "MedianDNE.Whole", "IQRDNE.Whole", "MeanDNE.Convex", "MeanDNE.Concave", "Proportion.DNEunder0.0001", "Proportion.DNEover0.6" ], "rows": 140, "table": true, "tojson": true }, { "name": "ThaiData", "title": "ThaiData", "object": "ThaiData", "class": [ "data.frame" ], "fields": [ "Age", "MeanDNE.Apex", "MedianDNE.Apex", "IQRDNE.Apex", "TotalDNE.TotalPolygonFaces", "MedianDNE.Whole", "IQRDNE.Whole", "MeanDNE.Convex", "MeanDNE.Concave", "Proportion.DNEunder0.0001", "Proportion.DNEover0.6", "PCQDA_Estimated", "PCR_pred", "PCLR_pred" ], "rows": 335, "table": true, "tojson": true }, { "name": "TrendLine", "title": "TrendLine", "object": "TrendLine", "class": [ "data.frame" ], "fields": [ "Age", "MeanDNE.Apex", "MedianDNE.Apex", "IQRDNE.Apex", "TotalDNE.TotalPolygonFaces", "MedianDNE.Whole", "IQRDNE.Whole", "MeanDNE.Convex", "MeanDNE.Concave", "Proportion.DNEunder0.0001", "Proportion.DNEover0.6", "Population" ], "rows": 1225, "table": true, "tojson": true }, { "name": "WholeSurface", "title": "Surface mesh of whole auricular surface.", "object": "WholeSurface", "class": [ "mesh3d" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "A_PCR_result", "title": "Estimating the age using A_PCR method", "topics": [ "A_PCR_result" ] }, { "page": "A_PCR_Test", "title": "A_PCR_Test", "topics": [ "A_PCR_Test" ] }, { "page": "A_PCR_Train", "title": "A_PCR_Train", "topics": [ "A_PCR_Train" ] }, { "page": "Apex", "title": "Surface mesh of apex of auricular surface.", "topics": [ "Apex" ] }, { "page": "Distribution", "title": "Distribution", "topics": [ "Distribution" ] }, { "page": "FirstObservation", "title": "FirstObservation", "topics": [ "FirstObservation" ] }, { "page": "M_PCR_result", "title": "Estimating the age using M_PCR method", "topics": [ "M_PCR_result" ] }, { "page": "M_PCR_Test", "title": "M_PCR_Train", "topics": [ "M_PCR_Test" ] }, { "page": "M_PCR_Train", "title": "M_PCR_Train", "topics": [ "M_PCR_Train" ] }, { "page": "MultiData", "title": "MultiData", "topics": [ "MultiData" ] }, { "page": "PCLR_result", "title": "Estimating the age using DNE_PCLR method", "topics": [ "PCLR_result" ] }, { "page": "PCLR_Test", "title": "PCLR_Test", "topics": [ "PCLR_Test" ] }, { "page": "PCLR_Train", "title": "PCLR_Train", "topics": [ "PCLR_Train" ] }, { "page": "PCQDA_result", "title": "Estimating the age using DNE_PCQDA method", "topics": [ "PCQDA_result" ] }, { "page": "PCQDA_Test", "title": "PCQDA_Test", "topics": [ "PCQDA_Test" ] }, { "page": "PCQDA_Train", "title": "PCQDA_Train", "topics": [ "PCQDA_Train" ] }, { "page": "PCR_result", "title": "Estimating the age using PCR method", "topics": [ "PCR_result" ] }, { "page": "PCR_Test", "title": "PCR_Test", "topics": [ "PCR_Test" ] }, { "page": "PCR_Train", "title": "PCR_Train", "topics": [ "PCR_Train" ] }, { "page": "RawData", "title": "RawData", "topics": [ "RawData" ] }, { "page": "SecondObservation", "title": "SecondObservation", "topics": [ "SecondObservation" ] }, { "page": "ThaiData", "title": "ThaiData", "topics": [ "ThaiData" ] }, { "page": "TrendLine", "title": "TrendLine", "topics": [ "TrendLine" ] }, { "page": "WholeSurface", "title": "Surface mesh of whole auricular surface.", "topics": [ "WholeSurface" ] } ], "_rundeps": [ "abind", "alphahull", "base64enc", "cli", "cpp11", "deldir", "digest", "dplyr", "farver", "fastmap", "generics", "ggplot2", "glue", "gtable", "htmltools", "interp", "isoband", "labeling", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "molaR", "nnet", "pillar", "pkgconfig", "polyclip", "pracma", "R.methodsS3", "R.oo", "R.utils", "R6", "RColorBrewer", "Rcpp", "RcppArmadillo", "RcppEigen", "rlang", "Rvcg", "S7", "scales", "sgeostat", "sp", "spatstat.data", "spatstat.geom", "spatstat.random", "spatstat.sparse", "spatstat.univar", "spatstat.utils", "splancs", "tensor", "tibble", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "introduction.Rmd", "filename": "introduction.html", "title": "introduction", "engine": "knitr::rmarkdown", "headings": [ "Abstract", "Introduction", "Datasets in the JSDNE package", "'PCQDA_Train'", "'PCQDA_Test'", "'PCLR_Train'", "'PCLR_Test'", "'PCR_Train'", "'PCR_Test'", "'A_PCR_Train'", "'A_PCR_Test'", "'M_PCR_Train'", "'M_PCR_Test'", "Materials", "Methods", "Results", "Accuracy, bias, and the average absolute deviation", "Summary of the Results of PCQDA model with Euroepan sample", "Summary of the Results of PCLR model with Euroepan sample", "Summary of the Results of PCR model with Euroepan sample", "Summary of the Results of A_PCR model with Southeast sample", "Summary of the Results of M_PCR model with Multipopulational samples", "Conclusion", "Acknowledgements", "Code Summary", "PCQDA_result()", "PCLR_result()", "A_PCR_result()", "M_PCR_result()" ], "created": "2024-03-03 21:24:31", "modified": "2025-11-27 06:43:24", "commits": 11 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "jsdne", "_universes": [ "jisunjang19" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "4.6", "date": "2026-05-26T06:21:43.000Z", "distro": "noble", "commit": "a02022075739f9b96ad81216096e952c9e5d4029", "fileid": "1d055bdd30f7ddf2c04ab67aaef5248b3e67ae15d36d46a41bb91470f28a59c4", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jisunjang19/actions/runs/26435736767" }, { "r": "4.6.0", "os": "linux", "version": "4.6", "date": "2026-05-26T06:22:05.000Z", "distro": "noble", "commit": "a02022075739f9b96ad81216096e952c9e5d4029", "fileid": "1ae49b3f10b7cc7448fdd8834edc2390e58ffd28c8f00861b06bdd814aa09bda", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jisunjang19/actions/runs/26435736767" }, { "r": "4.5.3", "os": "mac", "version": "4.6", "date": "2026-05-26T06:24:39.000Z", "commit": "a02022075739f9b96ad81216096e952c9e5d4029", "fileid": "1b08143eb9b1aeab81d925ab9453adc1a11d4d731c10a0dfeeb203b329c77fc3", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jisunjang19/actions/runs/26435736767" }, { "r": "4.6.0", "os": "mac", "version": "4.6", "date": "2026-05-26T06:24:05.000Z", "commit": "a02022075739f9b96ad81216096e952c9e5d4029", "fileid": "b3a0c1e06fb723dc018226b171f438ae1bcda5184a6585cefc71205e3bcd6fc2", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jisunjang19/actions/runs/26435736767" }, { "r": "4.6.0", "os": "wasm", "version": "4.6", "date": "2026-05-26T06:21:42.000Z", "commit": "a02022075739f9b96ad81216096e952c9e5d4029", "fileid": "2144188a7b3722f9d9ba1127c212e685850206efcad2c88688c511e42f02dfbb", "status": "success", "buildurl": "https://github.com/r-universe/jisunjang19/actions/runs/26435736767" }, { "r": "4.7.0", "os": "win", "version": "4.6", "date": "2026-05-26T06:21:20.000Z", "commit": "a02022075739f9b96ad81216096e952c9e5d4029", "fileid": "263f29562839cede560f9cd38fa73faf20f4493a3f3563d3fcec1c392f76a653", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jisunjang19/actions/runs/26435736767" }, { "r": "4.5.3", "os": "win", "version": "4.6", "date": "2026-05-26T06:21:22.000Z", "commit": "a02022075739f9b96ad81216096e952c9e5d4029", "fileid": "4d7929192912e39cdabb6fa760a94fec128d906b9eb87a7033b9663dcbf01b72", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jisunjang19/actions/runs/26435736767" }, { "r": "4.6.0", "os": "win", "version": "4.6", "date": "2026-05-26T06:21:03.000Z", "commit": "a02022075739f9b96ad81216096e952c9e5d4029", "fileid": "97b6af818a735c0f8a67076d1e4e204d2167e8c043f148e002aec59467bedb36", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/jisunjang19/actions/runs/26435736767" } ] }